Index

A

assign_cluster_to_data() (aweSOM.som.Lattice static method), [1] assign_cluster_to_lattice() (aweSOM.som.Lattice method), [1] aweSOM module aweSOM.make_sce_clusters module, [1]

aweSOM.run_som module, [1] aweSOM.sce module, [1] aweSOM.som module, [1]

B

batch_separator() (in module aweSOM.run_som), [1]

best_match() (aweSOM.som.Lattice static method), [1]

C

combine_separated_clusters() (in module aweSOM.make_sce_clusters), [1] compute_centroids() (aweSOM.som.Lattice method), [1] compute_heat() (aweSOM.som.Lattice method), [1] compute_SQ() (in module aweSOM.sce), [1]

compute_umat() (aweSOM.som.Lattice method), [1] conditional_jit() (in module aweSOM.sce), [1] coordinate() (aweSOM.som.Lattice static method), [1] create_mask() (in module aweSOM.sce), [1]

F

fast_som() (aweSOM.som.Lattice method), [1]

find_number_of_clusters() (in module aweSOM.sce), [1]

G

Gamma() (aweSOM.som.Lattice static method), [1] get_gsum_values() (in module aweSOM.make_sce_clusters), [1]

get_sce_cluster_separation() (in module aweSOM.make_sce_clusters), [1] get_unique_centroids() (aweSOM.som.Lattice method), [1]

I

initialize_lattice() (in module aweSOM.run_som), [1]

inv_manual_scaling() (in module aweSOM.run_som), [1]

L

Lattice (class in aweSOM.som), [1] list_clusters() (aweSOM.som.Lattice method), [1]

list_from_centroid() (aweSOM.som.Lattice method), [1] load_som_npy() (in module aweSOM.sce), [1] loop_over_all_clusters() (in module aweSOM.sce), [1]

M

make_file_name() (in module aweSOM.make_sce_clusters), [1] manual_scaling() (in module aweSOM.run_som), [1] map_data_to_lattice() (aweSOM.som.Lattice method), [1] merge_similar_centroids() (aweSOM.som.Lattice method), [1] module aweSOM aweSOM.make_sce_clusters, [1] aweSOM.run_som, [1] aweSOM.sce, [1] aweSOM.som, [1]

N

node_weight() (aweSOM.som.Lattice method), [1]

number_of_nodes() (in module aweSOM.run_som), [1]

P

parse_args() (in module aweSOM.make_sce_clusters), [1] (in module aweSOM.run_som), [1] (in module aweSOM.sce), [1]

plot_gsum_deriv() (in module aweSOM.make_sce_clusters), [1] plot_gsum_values() (in module aweSOM.make_sce_clusters), [1] plot_heat() (aweSOM.som.Lattice method), [1]

R

replace_value() (aweSOM.som.Lattice static method), [1]

rowix() (aweSOM.som.Lattice method), [1]

S

save_cluster_labels() (in module aweSOM.run_som), [1]

save_som_object() (in module aweSOM.run_som), [1] smooth_2d() (aweSOM.som.Lattice method), [1]

T

train_lattice() (aweSOM.som.Lattice method), [1]